Workshops/Lectures: Tuesdays/Thursdays 2:15 - 4:05 pm (LKSC 102)

(all class videos located here)

(office hours posted here)

Stuart Kim

Date

Topic

Presenter

Reading

3/31

Course introduction

 

Stuart Kim

Salari_2009*
HamburgSalari_2011*

4/2

Traits/GWAS
LD blocks results
problem set 1 out

Stuart Kim

Pearson*
GWAS1
GWAS2
GWAS3

4/7

SNPs/ GWAS demonstration
SNPedia introduction

Stuart Kim

How-to guides
GWAS data

4/9

Class GWAS/ Ancestry

Stuart Kim

Novembre et al. 2008
Manolio
Visscher
4/14

Bone Mineral Density
Type 2 diabetes
Longevity
Problem set 1 due

Stuart Kim

Kottgen 2010
Pattaro 2012

4/16

Chronic Kidney Disease/ Crohn's Disease
Whodunit?

Stuart Kim

Whodunit:
Culprit Genome
Rules of the game

4/21

Neurodegenerative disease
Problem set 2 out

Aaron Gitler
 
4/23
Neurodevelopmental disease
Aaron Gitler
Child Psychiatric Disorders

4/28

Human positive selection 
Neanderthal evolution

Stuart Kim

Sabeti et al., 2006
Neandertal Readings:
Green 2010 
23andme

4/30
Expression QTLs
Stuart Kim
Stephen Montgomery
 

5/5

Cancer genomics
problem set 2 due

Aaron Gitler
Robin Starr

problem set 1 answers
Vogelstein et al., 2013

5/7

Pers. Genome Seq.
Cardiovascular disease

Aaron Gitler
Josh Knowles

Knowles et al., 2012
Variant Interpretation Handout
5/12
Pharmacogenetics
Stuart Kim
Russ Altman
5/14

Personal Genomics
Next Gen Sequencing
Draft of SNPedia write-up due

Stuart Kim
Mike Snyder
 

5/19

Prenatal DNA Sequencing

Aaron Gitler
Yair Blumenfeld

Snyder Prenatal DNA Sequencing 2013
5/21

Frontiers in human genetics 
Class evaluation
Class Discussion
SNPedia projects posted online
Take home final out

Stuart Kim

final
extra credit
SNPedia write-ups

 


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