Workshops/Lectures: Tuesdays/Thursdays 2:15 - 4:05 pm (LKSC 102)

(all class videos located here)

(office hours posted here)

Stuart Kim

Date

Topic

Presenter

Reading

4/1

Course introduction

 

Stuart Kim

Salari_2009*
HamburgSalari_2011*

4/3

Linkage, genetic associations
LD blocks exercise 
LD blocks results
problem set 1 out

Stuart Kim

Pearson*
GWAS1
GWAS2
GWAS3

4/8

Class GWAS
SNPedia introduction

Stuart Kim

How-to guides
allelic data
genotype data

4/10

Ancestry, complex traits

Stuart Kim

Novembre et al. 2008
Manolio
Visscher

4/15

Neurodevelopmental disease

Aaron Gitler
Rosa Chuang

Child Psychiatric Disorders
4/17

FDA debate
Bone Mineral Density
Chronic Kidney Disease

Problem set 1 due
Problem set 2 out

Stuart Kim
Zach Koslap
Laura Tong

Kottgen 2010
Pattaro 2012

4/22

TBD
Whodunit?

Stuart Kim

Whodunit:
Culprit Genome
Rules of the game

4/24

Human positive selection 
Neanderthal evolution

Stuart Kim

Sabeti et al., 2006
Neandertal Readings:
Green 2010 
23andme

4/29

Cancer genomics

Aaron Gitler
Robin Starr


5/1

Pers. Genome Seq.
Cardiovascular disease
problem set 2 due

Aaron Gitler
Josh Knowles

Knowles et al., 2012

5/6

Neurodegenerative disease

Rosa Chuang
Aaron Gitler
Katharine Moser

 
5/8
Pharmacogenetics
Stuart Kim
Russ Altman

5/13

Prenatal sequencing

Aaron Gitler
Yair Blumenfeld

5/15

Expression QTLs
Draft of SNPedia write-up due

Aaron Gitler
Stephen Montgomery

 

5/20

Next Gen Sequencing

Stuart Kim
Mike Snyder

 

5/22

Frontiers in human genetics 
Class evaluation
Class Discussion
SNPedia projects posted online
Take home final out

Stuart Kim

 


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