Workshops/Lectures: Tuesdays/Thursdays 2:15 - 4:05 pm (LKSC 102)

(all class videos located here)

(office hours posted here)

Stuart Kim

Date

Topic

Presenter

Reading

4/1

Course introduction

 

Stuart Kim

Salari_2009*
HamburgSalari_2011*

4/3

Linkage, genetic associations
LD blocks exercise 
LD blocks results
problem set 1 out

Stuart Kim

Pearson*
GWAS1
GWAS2
GWAS3

4/8

Class GWAS
SNPedia introduction

Stuart Kim

How-to guides
allelic data
genotype data

4/10

Ancestry, complex traits

Stuart Kim

Novembre et al. 2008
Manolio
Visscher

4/15

Neurodevelopmental disease

Aaron Gitler
Rosa Chuang

Child Psychiatric Disorders
4/17

FDA debate
Problem set 1 due
Problem set 2 out

Stuart Kim
Zach Koslap
Laura Tong

Kottgen 2010
Pattaro 2012

4/22

Bone Mineral Density
Chronic Kidney Disease

Whodunit?

Stuart Kim

Whodunit:
Culprit Genome
Rules of the game

4/24

Human positive selection 
Neanderthal evolution

Stuart Kim

Sabeti et al., 2006
Neandertal Readings:
Green 2010 
23andme

4/29

Cancer genomics

Aaron Gitler
Robin Starr

problem set 1 answers
DNA essay winners
cancer exercises
Vogelstein et al., 2013

5/1

Pers. Genome Seq.
Cardiovascular disease
problem set 2 due

Aaron Gitler
Josh Knowles

Knowles et al., 2012
Variant Interpretation Handout

5/6

Neurodegenerative disease

Rosa Chuang
Aaron Gitler
Katharine Moser

 
5/8
Pharmacogenetics
Diabetes
Stuart Kim
Russ Altman

5/13

Prenatal DNA Sequencing

Aaron Gitler
Yair Blumenfeld

Snyder Prenatal DNA Sequencing 2013

5/15

Expression QTLs
Draft of SNPedia write-up due

Aaron Gitler
Stephen Montgomery

 

5/20

Personal Genomics
Next Gen Sequencing

Stuart Kim
Mike Snyder

 

5/22

Obesity
Frontiers in human genetics 

Class evaluation
Class Discussion
SNPedia projects posted online
Take home final out

Stuart Kim

final
extra credit
SNPedia write-ups
Dainis video

 

6/5 Conversation of Personal Genetics

Jill Hagenkord
Kelly Ormond
Jacob Sherkow

2-??
Munzer Auditorium, Beckman Center


Valid XHTML 1.0 Strict