Selected Publications
Full publication list here.
Google Scholar here.
Continual evolution in nonreciprocal ecological models
Aditya Mahadevan, Daniel S. Fisher, arXiv, 2024
Hybridization breaks species barriers in long-term coevolution of a cyanobacterial population
Gabriel Birzu, Harihara Subrahmaniam Muralidharan, Danielle Goudeau, Rex R. Malmstrom, Daniel S. Fisher, Devaki Bhaya, eLife, 2023
Spatiotemporal ecological chaos enables gradual evolutionary diversification without niches or tradeoffs
Aditya Mahadevan, Michael Pearce, Daniel S. Fisher, eLife, 2023
Population genetics of polymorphism and divergence in rapidly evolving populations
Matthew Melissa, Benjamin Good, Daniel S. Fisher, Michael Desai, Genetics, 2022
Inevitability of Red Queen evolution driven by organismic complexity and simple feedback via environmental modification
Daniel S. Fisher, bioRxiv, 2021
A model for the interplay between plastic tradeoffs and evolution in changing environments
Mikhail Tikhonov, Shamit Kachru, Daniel S. Fisher, Proceedings of the National Academy of Sciences, 2020
Stabilization of extensive fine-scale diversity by ecologically driven spatiotemporal chaos
Michael Pearce, Atish Agarwala, Daniel S. Fisher, Proceedings of the National Academy of Sciences, 2020
The evolutionary dynamics and fitness landscape of clonal hematopoiesis
Caroline J. Watson, Alana Papula, Yeuk P. G. Poon, Wing H. Wong, Andrew L. Young, Todd E. Druley, Daniel S. Fisher, Jamie Blundell, Science, 2020
Adaptive walks on high-dimensional fitness landscapes and seascapes with distance-dependent statistics
Atish Agarwala, Daniel S. Fisher, Theoretical population biology, 2019
The dynamics of adaptive genetic diversity during the early stages of clonal evolution
Jamie Blundell, Katja Schwartz, Danielle Francois, Daniel S. Fisher, Gavin Sherlock, Sasha F Levy, Nature ecology & evolution, 2019
Emergent elasticity in the neural code for space
Sam Ocko, Kiah Hardcastle, Lisa M. Giocomo, Surya Ganguli, Proceedings of the National Academy of Sciences, 2018
Hidden complexity of yeast adaptation under simple evolutionary conditions
Yuping Li, Sandeep Venkataram, Atish Agarwala, Barbara Dunn, Dmitri A Petrov, Gavin Sherlock, Daniel S. Fisher, Current Biology, 2018
Rapid adaptation in large populations with very rare sex: scalings and spontaneous oscillations
Michael Pearce, Daniel S. Fisher, Theoretical Population Biology, 2019
Development of a Comprehensive Genotype-to-Fitness Map of Adaptation-Driving Mutations in Yeast
Sandeep Venkataram, Barbara Dunn, Yuping Li, Atish Agarwala, Jessica Chang, Emily R. Ebel, Kerry Geiler-Samerotte, Lucas Hérissant, Jamie Blundell, Sasha F. Levy, Daniel S. Fisher, Gavin Sherlock, Dmitri A. Petrov, Cell, 2016
Fine-scale diversity and extensive recombination in a quasisexual bacterial population occupying a broad niche
Michael Rosen, Michelle Davison, Devaki Bhaya, Daniel S. Fisher, Science, 2015
Quantitative evolutionary dynamics using high-resolution lineage tracking
Sasha F. Levy, Jamie Blundell, Sandeep Venkataram, Dmitri A. Petrov, Daniel S. Fisher, Gavin Sherlock, Nature, 2015
Acceleration of evolutionary spread by long-range dispersal
Oskar Hallatschek, Daniel S. Fisher, Proceedings of the National Academy of Sciences, 2014
Asexual evolution waves: fluctuations and universality
Daniel S. Fisher, Journal of Statistical Mechanics: Theory and Experiment, 2013