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Rosenberg lab research topics 2005-present
Classified by biological topics
Cultural evolution [219] [205] [183] [125]Gene genealogies, the coalescent, and evolutionary trees
Allele and haplotype frequencies [134] [61] [57] [49]
Ancestral configurations [223] [222] [211] [161] [152]
Coalescence times [227] [210] [207] [198] [195] [194] [170] [166] [154] [100] [89] [88] [80]
Coalescent histories [196] [176] [164] [160] [142] [135] [111] [68] [41]
Coalescent simulation [154] [140] [100] [89] [88] [72] [61] [60] [57] [48] [45] [42]
Consistency of species tree inference [139] [117] [109] [97] [85] [75] [67] [59] [47] [30]
Deep coalescence cost [118] [117] [103] [75]
Divergence model [106] [92] [89] [88] [78] [39] [36]
Galled trees [232] [229] [212]
Hybridization [150] [144]
Inference [90]
Labeled histories (see ranked labeled trees)
Labeled topologies (or unranked labeled trees) [204]
Migration [170]
Monophyly, paraphyly, polyphyly [206] [172] [141]
Multispecies coalescent [206] [179] [172] [143] [141] [140] [109] [97] [96] [90] [89] [88] [85]
[75] [59] [58] [47] [30]
Neighbor-joining [162] [117] [99]
Number of lineages [230] [215] [116] [42]
Perfect phylogenies [204]
Phylogenetic diversity [136] [108]
Ranked labeled trees [221] [212] [211] [204] [123] [117] [97] [85]
Ranked unlabeled trees (or Tajima trees) [204] [186]
Rooted triples [139] [117] [67] [59]
Splits [143]
Tree metrics [186]
Tree shape [197] [189] [118] [117] [103] [39] [36] [32] [29]
Unlabeled topologies (or unranked unlabeled trees) [223] [204] [189]
X and autosomes [227] [207] [195] [54]
Human population-genetic variation
Admixed populations [230] [215] [214] [208] [187] [184] [151] [147] [146] [137] [133] [124] [122]
[120] [99] [82] [79]
Ancient DNA [208] [200] [147] [146]
Balancing selection [157] [124] [76]
Community resources
HapMap [91] [73] [55] [50] [34]
[HGDP-CEPH panel [188] [185] [174] [169] [158] [149] [148] [138] [105] [104] [94] [91] [84]
[78] [74] [64] [61] [46] [34] [28] [26]
1000 Genomes [213]
Consanguinity [227] [144] [119]
Forensic genetics [218] [185] [159] [148] [138]
Groups of populations
Africa [102] [83]
African Americans [230] [215] [133]
Cape Verde [214] [208] [151]
Europe [147] [146]
India [93] [50] [35]
Jewish [227] [180] [166] [144] [114] [113] [112] [63]
Native Americans [200] [120] [95] [81] [71] [57] [44] [37]
Worldwide [213] [188] [174] [138] [125] [105] [104] [94] [91] [84] [78] [74] [66] [64] [61] [46]
[34] [28] [26]
Identity by descent [227] [207] [195] [194] [166] [114]
Languages and genes [214] [151] [125] [44]
Neanderthal admixture [173] [61] [42]
Out of Africa [188] [131] [119] [105] [104] [91] [84] [83] [80] [78] [61] [53] [34] [26]
Population structure [208] [203] [188] [185] [180] [174] [170] [165] [156] [149] [138] [132] [129]
[114] [104] [102] [91] [84] [81] [73] [66] [63] [46] [44] [35] [28] [26]
Quantitative genetics [163] [132] [129]
Runs of homozygosity [227] [194] [166] [144] [107] [105] [91]
Selective sweeps; natural selection [163] [157] [134] [127]
Serial founder model [188] [105] [104] [91] [84] [80] [61] [46] [26]
Spatial variation [125] [114] [104] [100] [94] [91] [81] [66] [61] [46] [28] [26]
Types of variation
Copy-number [66] [46]
Exomes [105]
Genomes [213]
Haplotypes [169] [127] [86] [83] [57] [46] [34]
Idiolectal [214] [151]
Microsatellites [218] [203] [188] [187] [185] [159] [158] [148] [138] [125] [113] [104] [95] [93]
[84] [81] [78] [74] [64] [63] [57] [44] [37] [35] [28] [26]
Next-generation sequence [200] [150]
Phenotypic [163] [132] [129]
Phonemes [125]
SNPs [218] [214] [182] [180] [175] [174] [166] [165] [159] [151] [149] [148] [120] [114] [94]
[91] [73] [65] [50] [46] [34]
X chromosome [227] [207] [195] [184] [147] [146] [137] [133] [74] [54]
Y chromosome [113] [93]
Mathematical epidemiology models [201] [183] [173]
Molecular ecology, genetic variation, and population biology in non-human organisms
Atlantic salmon (Salmo salar) [165]
Arabidopsis thaliana [174] [49]
California red-legged frog (Rana draytonii) [167]
Carp [38]
Chimpanzees [203]
Drosophila [127]
Maize [172] [141]
New Zealand native foxglove (Ourisia) [90]
North American pines [117]
North American wolves [165] [70]
Rats [190]
Sky island birds of genus Sholicola [170]
Strawberries (Fragaria) [150]
Tigers [234] [170]
Population genetics of human disease-gene mapping
Diverse populations [131] [69]
Genome-wide association [131] [110] [69] [62] [55]
Genotype imputation [226] [136] [110] [108] [106] [95] [92] [91] [83] [62] [55]
Polygenic scores [163]
Population structure [110] [31]
Rare recessive diseases [105] [91]
Replication [110] [60]
Tag SNPs [110] [51] [50] [34]
Theoretical population genetics and population genetics concepts
Admixture [216] [193] [187] [184] [162] [151] [137] [133] [122] [99] [82] [79]
Allele age [72] [57]
Allele-sharing dissimilarities [220]
Ancestral lineages [91] [90] [42] [39]
Assortative mating [193] [184]
Frequency of the most frequent allele [203] [169] [165] [149] [127] [102] [87] [52]
Gene drives [192]
Gene duplication [45]
Heterozygosity and homozygosity [187] [178] [158] [138] [127] [102] [87] [80] [74] [70] [61] [56]
[52] [46]
Inbreeding [144] [137] [119] [95]
Linkage disequilibrium [218] [175] [169] [159] [148] [110] [61] [55] [51] [46] [40]
Ploidy [150] [74]
Population structure [225] [216] [203] [182] [169] [165] [163] [149] [132] [129] [102] [95]
[54] [39] [31]
Private alleles [78] [57] [53]
Relatedness [218] [185] [159] [119] [107] [74] [73] [70] [56] [33]
Selection
Balancing selection [157] [124] [76]
Positive selection [157] [134] [127] [57] [48] [46]
Purifying selection [157] [105]
Time to the most recent common ancestor [227] [210] [207] [198] [195] [194] [170] [166] [154]
Classified by type of computational, mathematical, and statistical topics
Analysis of variation [163]Bayesian and approximate Bayesian inference [219] [167] [124] [96] [86] [76] [49] [46]
Birth-death process [179] [140]
Clustering and classification [225] [216] [208] [188] [180] [174] [162] [156] [151] [147] [146] [138]
[130] [125] [120] [117] [114] [94] [91] [86] [84] [73] [65] [63] [49] [46] [44] [43] [38] [35] [28] [27]
Coalescent simulation [179] [154] [144] [140] [134] [100] [72] [61] [60] [57] [48] [45] [42]
Coalescent theory [227] [210] [207] [206] [198] [195] [194] [179] [172] [170] [166] [154] [143] [141]
[139] [134] [116] [109] [106] [97] [92] [89] [88] [85] [80] [78] [75] [59] [58] [54] [47] [45] [42]
[39] [36] [32] [30]
Combinatorial identities [135] [129] [111] [68] [41] [29]
Combinatorial optimization [130] [43] [27]
Consistency of estimators [109] [99] [67] [59] [47] [30]
Contingency tables and association [175] [110] [62] [51] [40] [31]
Differential equation models [183] [173]
Discrete geometry [186]
Estimation with the coalescent [57] [49] [42] [34]
Expectation-maximization algorithm [95]
Fundamental properties of population-genetic statistics [228] [220] [217] [203] [178] [175] [169]
[165] [158] [149] [138] [127] [102] [87] [79] [52] [51] [40] [31]
Greedy algorithms [108] [43] [27]
Imputation [226] [218] [167] [159] [148] [136] [108] [106] [95] [92] [83] [69] [62] [55]
Inequalities [228] [220] [217] [203] [189] [187] [182] [178] [169] [165] [158] [149] [143] [132] [129]
[127] [109] [103] [102] [87] [79] [75] [52]
Lattices [223] [204]
Linear algebra [193] [187]
Maximum likelihood [167] [95] [90] [79] [67] [42]
Moment estimation [74] [70] [56]
Multivariate analysis [156] [148] [125] [117] [114] [100] [94] [73] [66] [63] [46]
Network theory [225] [205] [174] [170]
Pedigree analysis [74] [73] [70] [56] [33]
Phylogenetic combinatorics [232] [229] [224] [223] [222] [221] [212] [211] [206] [204] [197] [196]
[189] [176] [164] [162] [161] [160] [152] [142] [111] [109] [103] [97] [89] [88] [85] [68] [59]
[47] [41] [36] [29]
Polynomials [47] [30]
Rarefaction [213] [53] [46] [44] [34]
Recursions [230] [224] [223] [222] [215] [211] [206] [193] [192] [189] [184] [164] [162] [161] [152] [137]
[135] [133] [122] [111] [82] [68] [41] [39]
Sampling theory [74] [53] [40] [36]
Statistical testing [62] [36]
Classified by primary type of article
Book reviews [233] [71]Commentaries [208] [163]
Comments on published papers [171] [156] [137] [107]
Data analysis [234] [226] [219] [218] [214] [205] [200] [190] [180] [151] [150] [147] [146] [144] [138]
[125] [120] [119] [117] [105] [104] [94] [93] [91] [83] [81] [77] [73] [72] [70] [66] [65] [64] [63] [62]
[57] [55] [50] [49] [48] [46] [44] [38] [37] [35] [34] [33] [28] [26]
Editorials [201] [199] [191] [177] [168] [153] [128] [126] [115] [101]
Introductions to edited collections [202] [181] [112] [98]
Mathematics, models, and theory [232] [230] [229] [228] [227] [224] [223] [222] [221] [220] [217]
[216] [215] [212] [211] [210] [207] [206] [204] [203] [198] [197] [196] [195] [194] [193] [192]
[189] [187] [184] [183] [182] [179] [178] [176] [175] [173] [172] [170] [169] [166] [165] [164]
[162] [161] [160] [158] [154] [152] [149] [143] [141] [139] [135] [133] [132] [129] [127] [123]
[122] [118] [116] [111] [109] [106] [103] [102] [99] [97] [92] [89] [88] [87] [85] [82] [80] [79]
[78] [75] [68] [59] [54] [52] [51] [47] [45] [41] [40] [39] [31] [30] [29] [25]
Simulation [144] [140] [100] [61] [60]
Statistical methodology [225] [213] [208] [186] [185] [174] [167] [159] [148] [136] [134] [124] [108]
[96] [95] [90] [76] [74] [67] [56] [42] [36] [27]
Review articles [188] [157] [131] [110] [84] [69] [58] [32]
Software notes [130] [86] [53] [43]
