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Data sets
HGDP-CEPH human genome diversity cell line panel
The diversity panel is a large and widely-used collection of DNA samples from individuals distributed around the world. The properties of the sample were first reported by Cann et al. in Science 296: 261-262 (2002). We then reported genotypes of these individuals at a collection of genome-wide microsatellites (Rosenberg et al., Science 298: 2381-2385 [2002]). Since then, additional genotypes have been obtained for various loci, and a selection of publications based on these individuals is maintained at CEPH.
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Noah Rosenberg and Saurabh Mahajan with a box containing
the diversity panel DNA samples, February 2005
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Other lab data sets
- Chha Gaam Patels autosomal microsatellites, insertion/deletions, Y-chromosomal microsatellites, and mitochondrial HVS1 variable sites (from Pemberton et al., American Journal of Physical Anthropology 149: 92-103 [2012]).
- Jewish, European, and Middle Eastern microsatellite data (from Kopelman et al., BMC Genetics 10: 80 [2009]).
- Native American microsatellite data (from Wang et al., PLoS Genetics 3: 2049-2067 [2007]).
- SNP data in three
populations (from Rosenberg et al., American Journal
of Human Genetics 73: 1402-1422 [2003]). Readme file for these
data.
- Chicken microsatellite data (from Rosenberg et al., Genetics 159: 699-713 [2001])
- Microsatellite data in Israeli populations (from Rosenberg et al., Proceedings of the National Academy of Sciences 98: 858-863 [2001])
- DS64 microsatellite data in globally distributed populations (from Jin et al., Annals of Human Genetics 64: 117-134 [2000])
- DS28 microsatellite data in globally
distributed populations (from Jin et al.,
Annals of Human Genetics 64: 117-134 [2000])
Some lab data sets not listed here are included as supplementary files with their associated manuscripts
Additional data sets hosted by collaborating labs
- Jewish and non-Jewish SNP data set, lab of Mait Metspalu (from Behar et al., Human Biology 85: 859-900 [2013])