Multiscale Systems Biology Collaboration


  • D. Ma, K. L. Judd, D. Orban and M. A. Saunders,
    Stabilized optimization via an NCL algorithm, pp 173-191 in M. Al-Baali et al. (eds.), Numerical Analysis and Optimization. NAO-IV, Muscat, Oman, January 2017, Springer Proceedings in Mathematics & Statistics, Volume 235, Springer International Publishing AG (2018);

  • L. Yang, J. T. Yurkovich, C. J Lloyd, A. Ebrahim, M. A. Saunders, and B. O. Palsson, Principles of proteome allocation are revealed using proteomic data and genome-scale models, Scientific Reports 6:36734 (2016).

  • H. S. Haraldsdottir and R. M. T. Fleming, Identification of conserved moieties in metabolic networks by graph theoretical analysis of atom transition networks, submitted 2016.

  • A. Ebrahim, E. Almaas, E. Bauer, A Bordbar, AP Burgard, RL Chang, A. Drager, I. Famili, A. M. Feist, R. M. T. Fleming, S. S. Fong, V. Hatzimanikatis, M. J. Herrgard, A. Holder, M. Hucka, D. Hyduke, N. Jamshidi, S. Y. Lee, N. Le, Novere, J. A. Lerman, N. E. Lewis, D. Ma, R. Mahadevan, C. Maranas, H. Nagarajan, A. Navid, J. Nielsen, L. K. Nielsen, J. Nogales, A. Noronha, C. Pal, B. O. Palsson, J. A. Papin, K. R. Patil, N. D. Price, J. L. Reed, M. Saunders, R. S. Senger, N. Sonnenschein, Y. Sun, and I. Thiele, Do genome-scale models need exact solvers or clearer standards?, Molecular Systems Biology 11:831 (2015), 3 pp.