Publications

 

Preprints

Zhao X, Yan X, Contrepois K, Vallania F, Ellenberger M, Kashiwagi CM, Gagnon SD, Siebrand CJ, Cabruja M, Traver GM, McKay A, Hornburg D, Khatri P, Snyder MP, Zare RN and Brunet A (2022). Lipidomic profiling reveals age-dependent changes in complex plasma membrane lipids that regulate neural stem cell aging. BioRxiv   PDF

Ruetz T, Kashiwagi CM, Morton B, Yeo RW, Leeman DS, Morgens DW, Tsui CK, Li A, Bassik MC and Brunet A (2021) In vitro and in vivo CRISPR-Cas9 screens reveal drivers of aging in neural stem cells of the brain. BioRxivPDF

 

2024

Singh PP*, Reeves GA*, Contrepois K, Papsdorf K, Miklas JW, Ellenberger M, Hu C-K, Snyder MP and Brunet A (2024) Evolution of diapause in the African turquoise killifish by remodeling the ancient regulatory gene landscape. Cell, DOI: 10.1016/j.cell.2024.04.048. Abstract PDF

Chen Y*, Harel I*, Singh PP, Ziv I, Moses E, Goshtchevsky U, Machado BE, Brunet A* and Jarosz D* (2024) Tissue-specific landscape of protein aggregation and quality control in an aging vertebrate. Developmental Cell, DOI: 10.1016/j.devcel.2024.04.014.  Abstract PDF

Harel I*, Chen Y*, Ziv I, Singh PP, Navarro Negredo P, Goshtchevsky, Wang W, Astre G,  Moses E, McKay A, Machado BE, Hebestreit K, Yin S, Sánchez Alvarado A, Jarosz D*  and Brunet A* (2024) Identification of protein aggregates in the aging vertebrate brain with prion-like and phase-separation properties. Cell Reports, DOI: 10.1016/j.celrep.2023.112787. Abstract PDF

Xu L, Ramirez-Matias J, Hauptschein M, Sun ED, Lunger JC, Buckley MT, and Brunet A (2024) Restoration of neural progenitors by partial reprogramming in the aged neurogenic niche. Nature Aging, 4:546-567. Abstract PDF

Sun ED, Ma R, Navarro Negredo P, Brunet A, and Zou J (2024) TISSUE: uncertainty-calobrated prdiction of single-cell spatial transcriptomics improves downstream analaysis. Nature Methods, 21:444-454. Abstract PDF

Reyes JM, Ayala T, Zhang L, Bortoletto AS, Rosas C, Chen C-W, Waldvogel SM, Guzman AG, Aguilar R, Gupta S, Liu L, Buckley MT, Patel K, Marcogliese AN, Li Y, Curry CV, Rando TA, Brunet A, Parchem RJ, Rau RE, and Goodell MA (2024) Hematologic DNMT3A reduction and high-fat diet synergize to promote weight gain and tissue inflammation. iScience, DOI: 10.1016/j.isci.2024.109122. Abstract PDF

 

2023

Silva-García CG, Láscarez-Lagunas LI, Papsdorf K, Heinz C, Prabhakar A, Morrow CS, Pajuelo Torres L, Sharma A, Liu J, Colaiácovo MP, Brunet A, Mair WB (2023) The CRTC-1 transcriptional domain is required for COMPASS-complex mediated longevity in C. elegans. Nature Aging, 3:1358-1371. doi: 0.1038/s43587-023-00517-8. Abstract PDF

Yeo RW*, Zhou OY*, Zhong BL, Sun ED, Navarro Negredo P, Nair S, Sharmin M, Ruetz TZ, Wilson M, Kundaje A, Dunn AR, and Brunet A (2023) Chromatin accessibility dynamics of neurogenic niche cells reveal defects in neural stem cell adhesion and migration during aging. Nature Aging, 3:866-893. doi: 10.1038/s43587-023-00449-3. Abstract PDF

Papsdorf K,  Miklas JW, Hosseini A, Cabruja M, Morrow CS, Savini M, Yu Y, Silva-Garcia CG, Haseley NR, Murphy LM, Yao P, de Launoit E, Dixon SJ, Snyder MP, Wang MC, Mair WB, and Brunet A (2023) Lipid droplets and peroxisomes are co-regulated to drive lifespan extension in response to mono-unsaturated fatty acids. Nature Cell Biology, doi: 10.1038/s41556-023-01136-6. Abstract  PDF

Bedbrook CN*, Nath RD*, Nagvekar R, Deisseroth K, and Brunet A (2023) Rapid and precise genome-engineering in a naturally short-lived vertebrate. eLife, doi: 10.7554/eLife.80639. Abstract  PDF

Buckley MT*, Sun E*, Benson GM, Liu L, Schaum N, Xu L, Reyes JM,  Goodell MA, Weissman IL, Wyss-Coray T, Rando TA and Brunet A (2023) Cell type-specific aging clocks to quantify aging and rejuvenation in neurogenic regions of the brain. Nature Aging, 3:121-137. Abstract   PDF

Liu L, Kim S, Buckley MT*,  Reyes JM, Kang J, Tian L, Wang M, Lieu A, Mao M, Rodriguez-Mateo C, Ishak HD, Jeong M, Wu JC, Goodell MA, Brunet A, Rando TA (2023) Exercise reprograms the inflammatory landscape of multiple stem cell compartments during mammalin aging . Cell Stem Cell, S1934-5909(23)00087-5, doi: 10.1016/j.stem.2023.03.016. Abstract  PDF

Chen J, Khondker R, and Brunet A (2023) Breeding and reproduction of the African turquoise killifish Nothobranchius furzeri Cold Spring Harb Protoc, doi: 10.1101/pdb.prot107816. Abstract   PDF

Nath RD*, Bedbrook CN*, Nagvekar R, and Brunet A (2023) Husbandry of the African turquoise killifish Nothobranchius furzeri. Cold Spring Harb Protoc, doi: 10.1101/pdb.prot107738. Abstract   PDF

Bedbrook CN*, Nath RD*, Barajas R and Brunet A (2023) Life span assessment in the African turquoise killifish Nothobranchius furzeri. Cold Spring Harb Protoc, doi: 10.1101/pdb.prot107917. Abstract   PDF

Reeves GA, Singh PP, and Brunet A (2023) Chromatin accessibility profiling and data analysis using ATAC-seq in Nothobranchius furzeri. Cold Spring Harb Protoc, doi: 10.1101/pdb.prot107747. Abstract   PDF

Boos F, Chen J, and Brunet A (2023) The African turquoise killifish: A scalable vertebrate model for aging and other complex phenotypes. Cold Spring Harb Protoc, doi: 10.1101/pdb.over107737. Abstract   PDF

Zhou OY and Brunet A (2023) Seeig is believing: old clones die young. Nature Aging, 3: 371-373.  PDF

Brunet A, Goodell MA and Rando TA (2023). Ageing and rejuvenation of tissue stem cells and their niches. Nature Review Molecular and Cellular Biology, doi: 10.1038/s41580-022-00510-wAbstract  PDF

 

2022

McKay A*, Costa EK*, Chen J*, Hu C-K, Chen X, Bedbrook CN, Khondker RC, Thielvoldt M, Singh, PP, Wyss-Coray T, and Brunet A (2022) An automated feeding system for the African killifish reveals effects of dietary restriction on lifespan and allows scalable measurement of associative learning. Elife PDF

Booth LN, Shi C, Tantilert C, Yeo RW, Miklas, JW, Hebestreit K, Hollenhorst CN, Maures TJ, Buckley MT, Murphy CT* and Brunet A* (2022) Males induce premature demise of the opposite sex by multifaced strategies. Nature Aging, 2:809-823. PDF       

Miklas JW and Brunet A (2022). Long life depends on open communication. Nature Cell Biology, 24: 808-810.  PDF

 

2021

Navarro Negredo P and Brunet A (2021) Unwanted help from T cells in the aging central nervous system. Nature Aging, 1: 330-331. PDF

Cabruja M, Priotti J, Domizi P, Papsdorf K, Kroetz DL, Brunet A,  Contrepois K, and Snyder MP (2021)        In depth triacylglycerol profiling using MS3 Q-Trap mass spectrometry. Anal Chim Acta , 1184: 339023. PDF

 

2020 

Wang W, Hu C-K, Zeng A, Alegre D, Hu D, Gotting K, Ortega Granillo A, Wang Y, Robb S, Schnittker R, Zhang S, Alegre D, Li H, Ross E, Zhang N, Brunet A, and Sánchez Alvarado A (2020) Changes in regeneration-responsive enhancers shape regenerative capacities in vertebrates. Science, 369: eaaz3090. Abstract PDF

Yan X*, Zhao X*, Zhou Z*, McKay A, Brunet A, and Zare RN (2020) Cell-type-specific metabolic profiling achieved by combining desorption electrospray ionization mass spectrometry imaging and immunofluorescence staining. Anal Chem, doi: 10.1021/acs.analchem.0c02519. Abstract PDF

Navarro Negredo P*, Yeo RW*, and Brunet A (2020) Aging and Rejuvenation of Neural Stem Cells and Their Niches. Cell Stem Cell, 27: 202-223. Abstract PDF

Brunet A (2020) Old and new models for the study of human ageing. Nature Review Mol Cell Biol, doi: 10.1038/s41580-020-0266-4. Abstract PDF

Vonk WIM, Rainbolt TK, Dolan PT, Webb AE, Brunet A, and Frydman J (2020) Differentiation drives widespread rewiring of the neural stem cell chaperone network. Molecular Cell, 78: 329-345.e9. Abstract PDF

Hu C-K, Wang W, Brind'Amour J, Singh PP, Reeves GA, Lorincz MC, Sánchez Alvarado A and Brunet A (2020) Vertebrate diapause preserves organisms long term through Polycomb complex members. Science, 367: 870-874. Abstract PDF

Miklas JW and Brunet A (2020) Support cells in the brain promote longevity. Science, 367: 365-366. Abstract PDF

Ahadi S, Zhou W, Schüssler-Fiorenza Rose SM, Sailani MR, Contrepois K, Avina M, Ashland M, Brunet A, and Snyder M (2020) Personal aging markers and ageotypes revealed by deep longitudinal profiling. Nature Medicine, 26: 83-90. Abstract PDF

 

2019

Mahmoudi S*, Mancini E*, Moore A, Xu L, Jahanbani F, Hebestreit K, Srinivasan R, Li X, Devarajan K, Prélot L, Ang CE, Shibuya Y, Benayoun BA, Chang ALS, Wernig M, Wysocka J, Longaker MT, Snyder MP and Brunet A (2019) Heterogeneity in old fibroblasts is linked to variability in reprogramming and wound healing. Nature, 574: 553-558. Abstract PDF

Booth LN, Maures TJ, Yeo RW, Tantilert C and Brunet A (2019) Self-sperm induce resistance to the detrimental effects of sexual encounters with males in hermaphroditic nematodes. eLife, 8:e46418. Abstract PDF

Dulken BW*, Buckley MT*, Navarro Negredo P*, Saligrama N, Cayrol R, Leeman DS, Benson GM, Boutet SC, Hebestreit K, Pluvinage JV, Wyss-Coray T, Weissman IL, Vogel H,  Davis MM and Brunet A (2019) Single-cell analysis reveals T cell infiltration in old neurogenic niches. Nature, 571: 205-210. Abstract PDF

Singh PP*, Demmitt BA*, Nath RD*, and Brunet A (2019) The genetics of aging: a vertebrate perspective. Cell, 177: 200-220. Abstract PDF

Benayoun BA, Pollina EA, Singh PP, Mahmoudi S, Harel I, Casey KM, Dulken BW, Kundaje A and Brunet A (2019) Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses. Genome Research, 29: 697-709. Abstract PDF

Mahmoudi S*, Xu L* and Brunet A (2019) Turning back time with emerging rejuvenation strategies Nature Cell Biology, 21: 32-43. Abstract PDF

 

2018

Papsdorf K and Brunet A (2018) Linking lipid metabolism to chromatin regulation in aging Trends Cell Biol, 29: 97-116. Abstract PDF

Lim JP, Fehlauer H, Das A, Saro G, Glauser DA, Brunet A, and Goodman MB (2018) Loss of CaMKI function disrupts salt aversive learning in C. elegans. J Neuroscience, 38: 6114-6129. Abstract PDF

Contrepois K, Mahmoudi S, Ubhi BK, Papsdorf K, Hornburg D, Brunet A and Snyder M (2018) Cross-platform comparison of untargeted and targeted lipidomics approaches on aging mouse plasma.Scientific reports , 8: 17747. Abstract PDF

Leeman DS, Hebestreit K, Ruetz T, Webb AE, McKay A, Pollina EA, Dulken BW, Zhao X, Yeo RW, Ho TT, Mahmoudi S, Devarajan K, Passegué E, Rando TA, Frydman J, and Brunet A (2018) Lysosome activation clears aggregates and enhances quiescent neural stem cell activation during aging. Science, 359: 1277-1283. Abstract PDF

Hu C-K and Brunet A (2018) The African turquoise killifish: A research organism to study vertebrate aging and diapause. Aging Cell, 17: e12757. Abstract PDF

Dulken BW and Brunet A (2018) Same path, different beginnings. Nature Neuroscience, 21: 159-160. Abstract PDF

Wagner JT, Singh PP, Romney AL, Riggs CL, Minx P, Woll SC, Roush J, Waren WC, Brunet A, and Podrabsky JF (2018) The genome of Austrofundulus limnaus offers insights into extreme vertebrate stress tolerance and embrynic development. BMC Genomics, 19: 155. Abstract PDF

 

2017

Daugherty AC*, Yeo RW*, Buenrostro JD, Greenleaf WJ, Kundaje A, and Brunet A (2017) Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans. Genome Research, 27: 2096-2107. Abstract PDF

Tan MH, Li Q, Shanmugam M, Piskol R, ...Pollina EA, Leeman DS,.... Brunet A, Conrad DF, Samuel CE, O'Connell MA, Walkley CR, Nishikura K and Li JB  (2017) Dynamic landscape and regulation of RNA editing in mammals. Nature, 550: 249-254. Abstract PDF

Russell JJ, Theriot JA, Sood P, Marshall WF, Landweber LF, Fritz-Laylin L, Polka JK, Oliferenko S, Gerbich T, Gladfelter A, Umen J, Bezanilla M, Lancaster MA, He S, Gibson MC, Goldstein B, Tanaka EM, Hu CK and Brunet A (2017) Non-model model organisms. BMC Biol, 15: 55. Abstract PDF

Theret M, Gsaier L, Schaffer B, Juban G, Ben Larbi S, Weiss-Gayet M, Bultot L, Collodet C, Foretz M, Desplanches D, Sanz P, Zang Z, Yang L, Vial G, Viollet B, Sakamoto K, Brunet A, Chazaud B, Mounier R (2017) AMPKa1-LDH pathway regulates muscle stem cell self-renewal by controlling metabolic homeostasis. EMBO J, 36: 1946-1962. Abstract PDF

Han S, Schroeder EA, Silva-Garcia CG, Hebestreit K, Mair WB and Brunet A (2017) Mono-unsaturated fatty acids link H3K4me3 modifiers to C. elegans lifespan. Nature, 544: 185-190. Abstract PDF

Kao AW, McKay A, Singh PP, Brunet A, and Huan EJ (2017) Progranulin, lysosomal degradation and neurodegenerative diseases. Nature Reviews Neuroscience, 18: 325-333. Abstract PDF

Brunet A and Rando T (2017) Interaction between epigenetic and metabolism in stem cell aging. Current Opinion in Cell Biology, 45: 1-7. Abstract PDF

Dulken BW, Leeman DS, Boutet SC, Hebestreit K and Brunet A (2017) Single-cell transcriptomic reveals heterogeneity and transcriptional dynamics in the neural stem cell lineage. Cell Reports, 18: 777-790. Abstract PDF

 

2016

Mahmoudi S and Brunet A (2016) Burst of reprogramming: a path to extend lifespan? Cell, 167:1672-1674. Abstract PDF

Harel I, Valenzano DR and Brunet A (2016) Efficient genome engineering approaches for the short-lived African turquoise killifish. Nature Protocols, 11:210-2028. Abstract PDF African Killifish Genome Browser

Ahlenius H, Chanda S, Webb AE, Yousif I, Karmasin J, Prusiner SB, Brunet A Sudhöf TC and Wernig M (2016) FoxO3 regulates neuronal reprogramming of cells from postnatal and aging mice. Proc Natl Acad Sci,113:8514-8519. Abstract PDF

Booth LN and Brunet A (2016) The aging epigenome. Molecular Cell, 62:728-44. Abstract PDF

Webb AE, Kundaje A and Brunet A (2016) Characterization of the direct targets of FOXO transcription factors throughout evolution. Aging Cell, 15:673-85. Abstract PDF

Yeo R and Brunet A (2016) Deconstructing dietary restriction: a case for systems approaches in aging. Cell Metabolism, 23:395-96. Abstract PDF

 
2015

Valenzano DR*, Benayoun BA*, Singh PP*, Zhang E, Etter PD, Hu CK, Clément-Ziza M, Willemsen D, Cui R, Harel I, Machado BE, Yee MC, Sharp SC, Bustamante CD, Beyer A, Johnson EA and Brunet A (2015) The African turquoise killifish genome provides insights into evolution and genetic architecture of lifespan. Cell, 163:1539-54. *Equal contribution. Abstract PDF African Killifish Genome Browser

Harel I and Brunet A (2015) The African turquoise killifish: a model for exploring vertebrate aging and diseases in the fast lane. Cold Spring Harb Quant Biol, pii: 027524. Abstract PDF 

Schaffer BE, Levin RS, Hertz NT, Maures TJ, Schoof ML, Hollstein PE, Benayoun BA, Banko MR, Shaw RJ, Shokat KM and Brunet A (2015) Identification of AMPK phosphorylation sites reveals a network of proteins involved in cell invasion and facilitates large scale substrate prediction. Cell Metabolism, 22:907-21. Abstract PDF

Schroeder EA and Brunet A (2015) Lipid profiles and signals for long life. Trends Endocrinol Metab, 26:589-92. Abstract PDF

Pech MF*, Garbuzov A*, Hasegawa K, Sukhwani M, Zhang RJ, Benayoun BA, Brockman SA, Lin S, Brunet A, Orwig KE and Artandi SE (2015) High telomerase is a hallmark of undifferentiated spermatogonia and is required for maintenance of male germline stem cells. Genes&Development 29:2420-34. *Equal contribution. Abstract

Benayoun BA*, Pollina EA* and Brunet A (2015) Epigenetic regulation of aging: linking environmental input to genomic stability. Nature Review Mol Cell Biol16:593-610. *Equal contribution. Abstract PDF

Booth LN and Brunet A (2015) Shockingly early: Chromatin-mediated loss of the heat shock response. Molecular Cell 59:515-16. Abstract PDF

Dulken B and Brunet A (2015) Stem cell aging and sex: are we missing something? Cell Stem Cell 16:588-90. Abstract PDF

Harel I, Benayoun BA, Machado B, Singh PP, Hu CK, Pech MF, Valenzano DR, Zhang E, Sharp SC, Artandi SE and Brunet A (2015) A platform for rapid exploration of aging and diseases in a naturally short-lived vertebrate. Cell 160:1013-26. Abstract PDF

Han S and Brunet A (2015) Cell biology: Lysosomal lipid lengthens life span. Science, 347: 32-33. Abstract PDF

Kareta MS, Gorges LL, Hafeez S, Benayoun BA, Marro S, Zmoos AF, Cecchini MJ, Spacek D, Batista LF, O'Brien M, Ng YH, Ang CE, Vaka D, Artandi SE, Dick FA, Brunet A, Sage J and Wernig M (2015) Inhibition of pluripotency networks by the Rb tumor suppressor restricts reprogramming and tumorigenesis. Cell Stem Cell, 16:39-50. Abstract PDF

 

2014

Benayoun BA*, Pollina EA*, Ucar D*, Mahmoudi S, Karra K, Wong E, Devarajan K, Daugherty AC, Kundaje A, Mancini E, Rando TA, Snyder MP, Baker JC, Cherry M and Brunet A (2014) H3K4me3 breadth is linked to cell identity and transcriptional consistency. Cell, 158:673-688. *Equal contribution. Abstract PDF Database Correction

Maures TJ, Booth LN, Benayoun BA, Izrayelit Y, Schroeder FC and Brunet A (2014) Males shorten the life span of C. elegans hermaphrodites via secreted compounds. Science, 343:541-544. Abstract PDF

Webb AE and Brunet A (2014) FOXO transcription factors: key regulators of cellular quality control. Trends Biochem Sci., 39: 159-169.4. Abstract PDF

Leeman DS and Brunet A (2014) Stem cells: Sex specificity in the blood. Nature, 505:488-490. Abstract PDF

Gopinath SD, Webb AE, Brunet A and Rando TA (2014) FOXO3 promotes quiescence in adult muscle stem cells during the process of self-renewal. Stem Cell Reports, 2: 414-426. Abstract PDF

 

2013

Wapinski OL, Vierbuchen T, Qu K, Lee QY, Chanda S, Fuentes DR, Giresi PG, Ng YH, Marro S, Neff NF, Drechsel D, Martynoga B, Castro DS, Webb AE, Südhof TC, Brunet A, Guillemot F, Chang HY and Wernig M (2013) Hierarchichal mechanisms for direct reprogramming of fibroblasts to neurons. Cell, 155:621-635. Abstract PDF

Webb AE, Pollina EA, Vierbuchen T, Urbán N, Ucar D, Leeman DS, Martynoga B, Sewak M, Rando TA, Guillemot F, Wernig M and Brunet A. FOXO3 shares common targets with ASCL1 genome-wide and inhibits ASCL1-dependent neurogenesis. Cell Reports 4: 477-491. Abstract PDF

Liu L, Cheung TH, Charville GW, Urgo BM, Leavitt T, Shih J, Brunet A, and Rando TA. Chromatin modifications as determinants of muscle stem cell quiescence and chronological aging. Cell Reports 4: 189-204. Abstract PDF

Rafalski VA, Ho PP, Brett JO, Ucar D, Dugas JC, Pollina EA, Chow LM, Ibrahim A, Baker SJ, Barres BA, Steinman L and Brunet A (2013) Expansion of oligodendrocyte progenitor cells following SIRT1 inactivation in the adult brain. Nature Cell Biology 15: 614-624. Abstract PDF

Webb AE and Brunet A (2013) FOXO flips the longevity SWItch.
Nature Cell Biology 15: 444-446.
Abstract PDF

Lim JP and Brunet A (2013) Bridging the transgenerational gap with epigenetic memory. Trends in Genetics 29: 176-186. Abstract PDF

 

2012

Rafalski VA, Mancini E and Brunet A (2012) Energy metabolism and energy-sensing pathways in mammalian embryonic and adult stem cell fate Journal of Cell Science 125: 5597-608. Abstract PDF

Salih DA, Rashid AJ, Colas D, de la Torre-Ubieta L, Zhu RP, Morgan AA, Santo EE, Ucar D, Devarajan K, Cole CJ, Madison DV, Shamloo M, Butte AJ, Bonni A, Josselyn SA, Brunet A (2012) FoxO6 regulates memory consolidation and synaptic function. Genes & Development 26:2780-801. Abstract PDF Supplemental PDF

Mahmoudi S and Brunet A (2012) Aging and reprogramming: a two-way street. Current Opinion in Cell Biology, 24:744-756. Abstract PDF

Calnan DR, Webb AE, White JL, Stowe TR, Goswami T, Shi X, Espejo A, Bedford MT, Gozani O, Gygi SP, and Brunet A (2012) Methylation by Set9 modulates FoxO3 stability and transcriptional activity. Aging, 4:462-79. Abstract PDF

Benayoun BA and Brunet A (2012) Epigenetic memory of longevity in Caenorhabditis elegans. Worm, 1:1: 1-5. Abstract PDF

Han S and Brunet A (2012) Histone methylation makes its mark on longevity. Trends in Cell Biology, 22:42-49. Abstract PDF

 

2011

Valenzano DR, Sharp S and Brunet A (2011) Transposon-mediated transgenesis in the short-lived African killifish Nothobranchius furzeri, a vertebrate model for aging. G3, Genes Genome Genetics, 1: 531-538. PDF Cover article.

Banko MR , Allen JJ, Schaffer BE, Wilker EW, Tsou P, White KL, Villén J, Wang B, Kims SR, Sakamoto K, Gygi SP, Cantley LC, Yaffe MB, Shokat KM, and Brunet A (2011). Chemical genetic screen for AMPKalpha2 substrates uncovers a network of proteins involved in mitosis. Molecular Cell, 44: 878-892. Abstract PDF Supplementary information

Greer EL, Maures TJ, Ucar D, Hauswirth AG, Mancini E, Lim JP, Benayoun BA, Shi Y and Brunet A (2011). Transgenerational epigenetic inheritance of longevity in Caenorhabditis elegans. Nature (Article), 479: 365-371. Abstract PDF Supplementary information

Maures TJ, Greer EL, Hauswirth AG and Brunet A (2011). H3K27 demethylase UTX-1 regulates
C. elegans lifespan in a germline-independent, insulin-dependent, manner. Aging Cell, 10: 980-990.
Abstract PDF

Brunet A (2011) A CRTCal link between energy and life span. Cell Metabolism, 6: 358-360. Abstract PDF

Pollina EA and Brunet A (2011) Epigenetic regulation of aging stem cells. Oncogene, 30: 3105-3126. Abstract PDF

Arnold CP, Tan R, Zhou B, Yue SB, Schaffert S, Biggs JR, Doyonnas R, Lo MC, Perry JM, Renault VM, Sacco A, Somervaille T, Viatour P, Brunet A, Cleary ML, Li L, Sage J, Zhang DE, Blau HM, Chen C and Chen CZ (2011) MicroRNA programs in normal and aberrant stem and progenitor cells. Genome Research, 21: 798-810. Abstract PDF

Renault VM, Thekkat PU, Hoang KL, White JL, Brady CA, Kenzelmann Broz D, Venturelli OS, Johnson TM, Oskoui PR, Xuan Z, Santo EE, Zhang MQ, Vogel H, Attardi LD and Brunet A (2011) The pro-longevity gene FoxO3 is a direct target gene of the p53 tumor suppressor. Oncogene, 30: 3207-3221. Abstract PDF

Brett JO, Renault VM, Rafalski VA, Webb AE and Brunet A (2011) The microRNA cluster miR-106b~25 regulates adult neural stem/progenitor cell proliferation and neuronal differentiation. Aging, 3: 108-124. Abstract PDF

Rafalski VA and Brunet A (2011) Energy metabolism in adult neural stem cell fate. Progress in Neurobiology, 93: 182-203. Abstract PDF

 

2010

Greer EL, Maures TJ, Hauswirth AG, Green EM, Leeman DS, Maro GS, Han S, Banko MR, Gozani O and Brunet A (2010) Members of the H3K4 trimethylation complex regulate lifespan in a germline-dependent manner in C. elegans. Nature, 466: 383-387. Abstract PDF

de la Torre-Ubieta L, Gaudillière B, Yang Y, Ikeuchi Y, Yamada T, DiBacco S, Stegmüller J, Schüller U, Salih DA, Rowitch D, Brunet A and Bonni A (2010) A FOXO-Pak1 transcriptional pathway controls neuronal polarity. Genes & Development, 8: 799-813. Abstract PDF

 

2009

Renault VM, Rafalski VA, Morgan AA, Salih DAM, Brett JO, Webb AE, Villeda SA, Thekkat PU, Guillerey C, Denko NC, Palmer TD, Butte AJ and Brunet A (2009) FoxO3 regulates neural stem cell homeostasis. Cell Stem Cell, 5: 527-539. Abstract PDF

Valenzano DR, Kirschner J, Kamber RA, Zhang E, Weber D, Cellerino A, Englert C, Platzer M, Reichwald K, and Brunet A (2009) Mapping loci associated with tail color and sex determination in the short-lived fish Nothobranchius furzeri. Genetics, 183: 1385-1395. Abstract PDF

Greer EL, Banko MR and Brunet A (2009) AMP-activated protein kinase and FoxO transcription factors in dietary restriction-induced longevity. Annals NY Academy of Science, 1170: 688-692. Abstract PDF

Brunet A (2009) Cancer: when restriction is good. Nature, 458: 713-714. Abstract PDF

Greer EL and Brunet A (2009) Different dietary restriction regimens extend lifespan by both independent and overlapping genetic pathways in C. elegans. Aging Cell, 8: 113-127. Abstract PDF

 

2008

Greer EL and Brunet A (2008) Signaling networks in aging. Journal of Cell Science , 121: 407-412. Abstract PDF Poster

Greer EL and Brunet A (2008) FoxO transcription factors in ageing and cancer. Acta Physiology (Oxf), 192: 19-28. Abstract

Salih DA and Brunet A (2008) FoxO transcription factors in the maintenance of cellular homeostasis during aging. Current Opinion in Cell Biology, 20: 126-136. Abstract PDF

Calnan DR and Brunet A (2008) The FoxO code. Oncogene, 27: 2276-2288. Abstract PDF

 

2007

Brunet A (2007) Aging and cancer: killing two birds with one worm. Nature Genetics, 39: 1306-1307. Abstract PDF

Greer EL, Dowlatshahi D, Banko MR, Hoang K, Blanchard D and Brunet A (2007) An AMPK-FOXO pathway mediates the extension of lifespan induced by a novel method of dietary restriction in C. elegans. Current Biology, 17: 1646-1656. Abstract PDF

Brunet A and Rando T (2007) From stem to stern. Nature, 449: 288-289. Abstract PDF

Greer EL, Oskoui PR, Banko, MR, Maniar JM, Gygi MP, Gygi SP and Brunet A (2007) The energy sensor AMP-activated protein kinase directly regulates the mammalian FOXO3 transcription factor. Journal of Biological Chemistry, 282: 30107-30119. Abstract PDF

Carter ME and Brunet A (2007) FOXO transcription factors. Current Biology 7(4): R113-114. PDF

 

2005

Greer EL and Brunet A (2005) FOXO transcription factors at the interface between longevity and tumor suppression. Oncogene, 24: 7410-7425. Abstract PDF

 

Before 2005 (selected publications)

Brunet A, Sweeney L, Sturgill F, Chua K, Greer P, Lin Y, Tran H, Ross S, Mostoslavsky R, Cohen H, Hu L, Cheng H, Jedrychowsky M, Gygi S, Sinclair D, Alt F and Greenberg ME (2004) Stress-dependent regulation of FOXO transcription factors by the SIRT1 deacetylase. Science, 303: 2011-2015. Abstract PDF

Tran H, Brunet A, Griffith E and Greenberg ME (2003) The Many Forks in FOXO’s Road. Science STKE, (172):RE5. Abstract PDF

Tran H*, Brunet A*, Grenier J, Datta S, Fornace Jr A, Distefano P, Chiang L and Greenberg ME (2002) DNA repair pathway stimulated by the Forkhead transcription factor FOXO3a (FKHRL1) through the GADD45 protein. Science, 296: 530-534. *Equal contribution. Abstract PDF

Brunet A, Kanai F, Stehn J, Xu J, Sarbassova D, Frangioni J, Dala S, DeCaprio J, Greenberg ME and Yaffe M (2002) 14-3-3 Transits to the Nucleus and actively participates in dynamic nucleo-cytoplasmic transport. Journal of Cell Biology, 156: 817-828. Abstract PDF

Brunet A*, Park J*, Tran H, Hu LS, Hemmings BA and Greenberg ME (2001) The protein kinase SGK mediates survival signals by phosphorylating the Forkhead transcription factor FKHRL1/FOXO3a. Molecular and Cellular Biology, 21: 952-965. *Equal contribution. Abstract PDF

Brunet A, Datta S and Greenberg ME (2001) Transcription-dependent and independent control of neuronal survival by the Pi3K-Akt signaling pathway. Current Opinion in Neurobiology, 11: 297-305. Abstract PDF

Brunet A, Bonni A, Zigmond, M, Lin MZ, Juo P, Hu L, Anderson M, Arden K, Blenis J and Greenberg ME (1999) Akt promotes cell survival by phosphorylating and inhibiting a Forkhead transcription factor. Cell, 96: 857-868. Abstract PDF

Bonni A, Brunet A, West AE, Datta SR, Takasu MA and Greenberg ME (1999). Cell survival promoted by the Ras-MAPK signaling pathway by transcription-dependent and transcription- independent mechanisms. Science, 286: 1358-1362. Abstract PDF

Brunet A, Roux D, Lenormand P, Dowd S, Keyse S and Pouysségur J (1999). Nuclear translocation of p42/p44 mitogen-activated protein kinase is required for growth factor-induced gene expression and cell cycle entry. EMBO Journal, 18: 664-74. Abstract PDF

Brunet A and Pouysségur J (1996) Identification of MAP kinase domains by re-directing stress signals into growth factor responses. Science, 272: 1652-1655. Abstract PDF