Genetics 210 - Genomics and Personalized Medicine

GENE210 - Genomics and Personalized Medicine

Workshops/Lectures: Tuesdays/Thursdays 2:15 - 4:05 pm (LKSC 102)

(all class videos located here)

(office hours posted here)

Stuart Kim

Date	Topic	Presenter	Reading
3/31	Course introduction	Stuart Kim	Salari_2009* Hamburg Salari_2011*
4/2	Traits/GWAS LD blocks results problem set 1 out	Stuart Kim	Pearson* GWAS1 GWAS2 GWAS3
4/7	SNPs/ GWAS demonstration SNPedia introduction	Stuart Kim	How-to guides GWAS data
4/9	Class GWAS/ Ancestry	Stuart Kim	Novembre et al. 2008 Manolio Visscher
4/14	Bone Mineral Density Type 2 diabetes Longevity Problem set 1 due	Stuart Kim	Kottgen 2010 Pattaro 2012
4/16	Chronic Kidney Disease/ Crohn's Disease Whodunit?	Stuart Kim	Whodunit: Culprit Genome Rules of the game
4/21	Neurodegenerative disease Problem set 2 out Problem set 1 answers	Aaron Gitler	SNPs for Parkinson's
4/23	Neurodevelopmental disease	Aaron Gitler	Child Psychiatric Disorders
4/28	Human positive selection Neanderthal evolution	Stuart Kim	Sabeti et al., 2006 Neandertal Readings: Green 2010 23andme
4/30	Expression QTLs Asthma Migraine	Stuart Kim Stephen Montgomery
5/5	Cancer genomics problem set 2 due	Aaron Gitler Robin Starr	Vogelstein et al., 2013 Exercises
5/7	Pers. Genome Seq. Cardiovascular disease	Aaron Gitler Josh Knowles	Knowles et al., 2012 Variant Interpretation Handout
5/12	Pharmacogenetics	Stuart Kim Russ Altman
5/14	Personal Genomics Sequencing Iceland Draft of SNPedia write-up due	Stuart Kim Mike Snyder	Sulem et al., 2015 Human KO
5/19	Prenatal DNA Sequencing	Aaron Gitler Yair Blumenfeld	Snyder Prenatal DNA Sequencing 2013
5/21	Class evaluation Class Discussion SNPedia projects posted online problem set 2 answers Take home final out	Stuart Kim	final patient genomes for final extra credit