Job script template
From FarmShare
(Difference between revisions)
Line 3: | Line 3: | ||
<pre> | <pre> | ||
#!/bin/bash | #!/bin/bash | ||
- | # the above line is called a 'hashbang' | + | # the above line is called a 'hashbang' and sets which shell you run under; you probably want bash |
# | # | ||
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#$ -w e | #$ -w e | ||
- | /full/path/ | + | /full/path/to/command arg1 arg2 arg3 ... |
- | # | + | #make sure that the command above actually doesn't use more memory or CPU than you specified. |
</pre> | </pre> |
Revision as of 12:32, 28 June 2013
This is meant to be a script you can copy and adapt to get up and running quickly. A similar one appears at the bottom of the man page for 'qsub'.
#!/bin/bash # the above line is called a 'hashbang' and sets which shell you run under; you probably want bash # # set the name of the job; this will appear in the job listing #$ -N example_job # # # set the maximum memory usage (per slot) #$ -l mem_free=3G # # # set the number of slots, replace '1' with a larger number if needed #$ -pe shm 1 # # # set the maximum run time, hh:mm:ss, default is 48hrs on FarmShare #$ -l h_rt=12:00:00 # # # send mail when job ends or aborts #$ -m ea # # # specify an email address #$ -M me@stanford.edu # # check for errors in the job submission options #$ -w e /full/path/to/command arg1 arg2 arg3 ... #make sure that the command above actually doesn't use more memory or CPU than you specified.