OpenMPI
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(New page: OpenMPI v1.4.3 is installed. Looks like the Debian package is not compiled with "SGE support": [code] barley01:/root# ompi_info | grep grid [/code] I created a PE in grid engine called "...) |
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| - | OpenMPI v1.4. | + | OpenMPI v1.4.5 is installed. |
Looks like the Debian package is not compiled with "SGE support": | Looks like the Debian package is not compiled with "SGE support": | ||
| - | + | <pre> | |
barley01:/root# ompi_info | grep grid | barley01:/root# ompi_info | grep grid | ||
| - | + | </pre> | |
I created a PE in grid engine called "orte", following this: | I created a PE in grid engine called "orte", following this: | ||
http://www.open-mpi.org/faq/?category=running#run-n1ge-or-sge | http://www.open-mpi.org/faq/?category=running#run-n1ge-or-sge | ||
| - | You should use the "qsub method" from that page to submit jobs to ge. | + | You should use the "qsub method" from that page to submit jobs to ge, so something like |
| + | <pre> | ||
| + | shell$ qsub -pe orte 4 my_mpirun_job.sh | ||
| + | </pre> | ||
Latest revision as of 11:36, 14 September 2013
OpenMPI v1.4.5 is installed.
Looks like the Debian package is not compiled with "SGE support":
barley01:/root# ompi_info | grep grid
I created a PE in grid engine called "orte", following this: http://www.open-mpi.org/faq/?category=running#run-n1ge-or-sge
You should use the "qsub method" from that page to submit jobs to ge, so something like
shell$ qsub -pe orte 4 my_mpirun_job.sh
